PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8143_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 510aa    MW: 55702 Da    PI: 5.994
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8143_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.58.5e-17331377455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+ksLq
  RrC8143_p2 331 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKSLQ 377
                 6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.47E-18323381No hitNo description
SuperFamilySSF474595.76E-21324390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-21324385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.584327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-14331377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-18333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MLDQVTMPLF ELFRLTNTKL ESAQDNNPSP RPVDEVVELV WENGQISTQS QSNRSRNIPP  60
PPQESSSRAR EIVNGSKTTM VEEIQMSVPS LMTGLSQDDD LVPWLNPHHH QSLDGYCSDF  120
LHDVSPVAVN EQESDDAFPL FQRRDNGNGP APADSSSPFN GFQSHSLYGS GRARDPPVTQ  180
PAKPDPSTSN KPGLLNFSHF LRTAALAKTN DSPPGSKEKS PQSPPNVFQT RVLGAKEVLN  240
ESVMPKDNQK ACLVSEDSNR KDQESEKAVV CSSVGSGNSP SESPLKRKHP DVQDIECHSE  300
QDVEGESGDG RKEAAPSRTG MGSKRSRSAE VHNLSERRRR DRINEKMRAL QELIPNCNKV  360
DKASMLDEAI EYLKSLQLQV QFMSMASGYY MPPVMFPPGM GHHYQAAAMA MGMGMPYAMG  420
LPDMSRGGPS VNNGPQFQFP GMQQPVAMAL PRVSAGGFFG SSTVEMNKSD DGSTRDLPGT  480
NDQTTTKSNN GLKPIKRKQA SPPDQFCGSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335340ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1001661e-164AF100166.1 Arabidopsis thaliana phytochrome interacting factor 3 (PIF3) mRNA, complete cds.
GenBankAF2516931e-164AF251693.1 Arabidopsis thaliana putative transcription factor BHLH8 mRNA, complete cds.
GenBankAK1172551e-164AK117255.1 Arabidopsis thaliana At1g09530 mRNA for putative transcription factor BHLH8, complete cds, clone: RAFL16-81-C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693604.10.0PREDICTED: transcription factor PIF3-like
SwissprotO805360.0PIF3_ARATH; Transcription factor PIF3
TrEMBLA0A078E6G50.0A0A078E6G5_BRANA; BnaC05g07080D protein
STRINGBra020017.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76652739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.20.0phytochrome interacting factor 3